Variant report

Variant	rs28411870
Chromosome Location	chr4:15784223-15784224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10029603	1.00[EUR][1000 genomes]
rs11574922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28429904	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs28454317	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7690096	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7694167	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15780200-15791600	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr4:15781000-15784600	Weak transcription	Spleen	Spleen
3	chr4:15781400-15784800	Weak transcription	Left Ventricle	heart
4	chr4:15781600-15786200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:15781800-15784600	Weak transcription	Psoas Muscle	Psoas
6	chr4:15781800-15784800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr4:15781800-15784800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:15781800-15785200	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:15781800-15785400	Weak transcription	Adipose Nuclei	Adipose
10	chr4:15781800-15792800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr4:15782000-15786600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr4:15782000-15790000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:15782000-15794600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:15782600-15785600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr4:15782600-15786200	Genic enhancers	Primary B cells from cord blood	blood
16	chr4:15782600-15786400	Genic enhancers	Primary T cells from cord blood	blood
17	chr4:15782800-15786400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr4:15783400-15784800	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr4:15783400-15786400	Genic enhancers	Fetal Thymus	thymus
20	chr4:15783400-15787200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:15783400-15787400	Enhancers	Primary B cells from peripheral blood	blood
22	chr4:15783800-15784600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:15783800-15786600	Enhancers	Duodenum Mucosa	Duodenum
24	chr4:15784000-15784400	Enhancers	GM12878-XiMat	blood
25	chr4:15784000-15784600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:15784000-15785000	Strong transcription	Primary hematopoietic stem cells	blood
27	chr4:15784000-15786000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr4:15784000-15787000	Genic enhancers	Thymus	Thymus
29	chr4:15784200-15784600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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