Variant report

Variant	rs10032392
Chromosome Location	chr4:120515966-120515967
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10003953	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10010097	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012406	1.00[AMR][1000 genomes]
rs10015714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10015999	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10017842	1.00[AMR][1000 genomes]
rs10021318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10023384	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10027735	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10028634	1.00[AMR][1000 genomes]
rs10029882	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10031328	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213498	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10471013	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11098519	1.00[AMR][1000 genomes]
rs11098520	1.00[AMR][1000 genomes]
rs28380652	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28399227	1.00[AMR][1000 genomes]
rs28405434	1.00[AMR][1000 genomes]
rs28419430	1.00[AMR][1000 genomes]
rs28436005	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28450144	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28461667	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28469881	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28470408	1.00[AMR][1000 genomes]
rs28535588	1.00[AMR][1000 genomes]
rs28576329	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28590285	1.00[AMR][1000 genomes]
rs28615474	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28622207	1.00[AMR][1000 genomes]
rs28634062	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28639494	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28639769	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28651206	1.00[AMR][1000 genomes]
rs28654414	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28665114	1.00[AMR][1000 genomes]
rs28669906	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28709577	1.00[AMR][1000 genomes]
rs28736368	1.00[AMR][1000 genomes]
rs28864814	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28870820	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3872804	1.00[AMR][1000 genomes]
rs55905129	1.00[AMR][1000 genomes]
rs56191916	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57295141	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57516186	1.00[AMR][1000 genomes]
rs59116083	1.00[AMR][1000 genomes]
rs60308574	0.85[AFR][1000 genomes]
rs61729464	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61823285	1.00[AMR][1000 genomes]
rs6534145	1.00[CEU][hapmap]
rs72918555	1.00[AMR][1000 genomes]
rs72918590	1.00[AMR][1000 genomes]
rs72918597	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72920607	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72920619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72920685	1.00[AMR][1000 genomes]
rs9307478	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884290	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884542	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9993996	1.00[AMR][1000 genomes]
rs9996803	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9997423	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9998244	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1010753	chr4:120429028-120684310	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537233	chr4:120429028-120684310	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1006572	chr4:120432494-120694243	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120485800-120520000	Weak transcription	Small Intestine	intestine
2	chr4:120486600-120516600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:120486800-120516400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:120486800-120527600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:120492200-120540000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:120501800-120520000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:120502000-120516200	Weak transcription	Fetal Intestine Large	intestine
8	chr4:120502200-120516400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr4:120502200-120527800	Weak transcription	Pancreas	Pancrea
10	chr4:120502400-120526400	Weak transcription	Fetal Stomach	stomach
11	chr4:120502600-120541000	Weak transcription	Left Ventricle	heart
12	chr4:120503000-120517600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr4:120503200-120516400	Weak transcription	Ovary	ovary
14	chr4:120503200-120517800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:120504400-120516400	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:120504400-120520200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:120504600-120519800	Weak transcription	Fetal Intestine Small	intestine
18	chr4:120505000-120519800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:120505200-120518400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr4:120505400-120516600	Weak transcription	Aorta	Aorta
21	chr4:120505600-120519800	Weak transcription	Duodenum Mucosa	Duodenum
22	chr4:120506000-120516000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr4:120506200-120525800	Weak transcription	Fetal Kidney	kidney
24	chr4:120509600-120520000	Weak transcription	Psoas Muscle	Psoas
25	chr4:120511400-120520000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr4:120511600-120519600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:120512600-120516000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:120512600-120519600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:120512600-120530400	Weak transcription	Colonic Mucosa	Colon
30	chr4:120512800-120516200	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:120512800-120531600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr4:120513200-120518400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr4:120513600-120517200	Strong transcription	Osteobl	bone
34	chr4:120513800-120516000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:120514000-120516000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr4:120514200-120517800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:120514200-120520000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:120514200-120528600	Weak transcription	Gastric	stomach
39	chr4:120514600-120516000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:120514800-120516000	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr4:120514800-120518200	Strong transcription	NHLF	lung
42	chr4:120514800-120518400	Weak transcription	Fetal Heart	heart
43	chr4:120514800-120519400	Weak transcription	Fetal Lung	lung
44	chr4:120515000-120519800	Weak transcription	Colon Smooth Muscle	Colon
45	chr4:120515400-120517000	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr4:120515600-120517600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:120515800-120517200	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr4:120515800-120517200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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