Variant report

Variant	rs28470408
Chromosome Location	chr4:120555668-120555669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10003953	1.00[AMR][1000 genomes]
rs10010097	1.00[AMR][1000 genomes]
rs10015714	1.00[AMR][1000 genomes]
rs10015999	1.00[AMR][1000 genomes]
rs10017842	1.00[AMR][1000 genomes]
rs10021318	1.00[AMR][1000 genomes]
rs10023384	1.00[AMR][1000 genomes]
rs10027735	1.00[AMR][1000 genomes]
rs10029882	1.00[AMR][1000 genomes]
rs10031328	1.00[AMR][1000 genomes]
rs10032392	1.00[AMR][1000 genomes]
rs10213498	1.00[AMR][1000 genomes]
rs10471013	1.00[AMR][1000 genomes]
rs28380652	1.00[AMR][1000 genomes]
rs28405434	1.00[AMR][1000 genomes]
rs28419430	1.00[AMR][1000 genomes]
rs28436005	1.00[AMR][1000 genomes]
rs28450144	1.00[AMR][1000 genomes]
rs28461667	1.00[AMR][1000 genomes]
rs28469881	1.00[AMR][1000 genomes]
rs28535588	1.00[AMR][1000 genomes]
rs28576329	1.00[AMR][1000 genomes]
rs28615474	1.00[AMR][1000 genomes]
rs28634062	1.00[AMR][1000 genomes]
rs28639494	1.00[AMR][1000 genomes]
rs28639769	1.00[AMR][1000 genomes]
rs28654414	1.00[AMR][1000 genomes]
rs28665114	1.00[AMR][1000 genomes]
rs28669906	1.00[AMR][1000 genomes]
rs28736368	1.00[AMR][1000 genomes]
rs28864814	1.00[AMR][1000 genomes]
rs28870820	1.00[AMR][1000 genomes]
rs3872804	1.00[AMR][1000 genomes]
rs56191916	1.00[AMR][1000 genomes]
rs57295141	1.00[AMR][1000 genomes]
rs57516186	1.00[AMR][1000 genomes]
rs61729464	1.00[AMR][1000 genomes]
rs61823285	1.00[AMR][1000 genomes]
rs72918590	1.00[AMR][1000 genomes]
rs72918597	1.00[AMR][1000 genomes]
rs72920607	1.00[AMR][1000 genomes]
rs72920619	1.00[AMR][1000 genomes]
rs72920685	1.00[AMR][1000 genomes]
rs9307478	1.00[AMR][1000 genomes]
rs9884290	1.00[AMR][1000 genomes]
rs9884542	1.00[AMR][1000 genomes]
rs9993996	1.00[AMR][1000 genomes]
rs9996803	1.00[AMR][1000 genomes]
rs9997423	1.00[AMR][1000 genomes]
rs9998244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1010753	chr4:120429028-120684310	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv537233	chr4:120429028-120684310	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1006572	chr4:120432494-120694243	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3466099	chr4:120552743-120556240	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3466100	chr4:120552768-120556201	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3466098	chr4:120552770-120556212	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3466102	chr4:120552788-120556162	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv3466101	chr4:120552835-120556137	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv17708	chr4:120552839-120556129	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3466103	chr4:120552849-120556136	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120552400-120558600	Weak transcription	Fetal Stomach	stomach
2	chr4:120554000-120559400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:120554000-120559400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:120554000-120559400	Weak transcription	NHLF	lung
5	chr4:120554200-120557400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:120554200-120559400	Weak transcription	Osteobl	bone

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