Variant report

Variant	rs10032488
Chromosome Location	chr4:148717837-148717838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148716400..148719081-chr4:148721482..148723868,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10027921	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10857227	0.91[AFR][1000 genomes]
rs11729081	0.81[EUR][1000 genomes]
rs12645249	0.81[EUR][1000 genomes]
rs12648074	0.81[EUR][1000 genomes]
rs12650280	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13116955	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13136202	0.81[EUR][1000 genomes]
rs1604785	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2118036	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2134706	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6829479	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6837391	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148708400-148721200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:148709000-148721200	Weak transcription	Lung	lung
3	chr4:148709000-148721400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:148709000-148721400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:148709000-148721400	Weak transcription	Esophagus	oesophagus
6	chr4:148710400-148729600	Weak transcription	HSMM	muscle
7	chr4:148711000-148720200	Weak transcription	Fetal Stomach	stomach
8	chr4:148711000-148729200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:148711600-148721200	Weak transcription	Pancreas	Pancrea
10	chr4:148713000-148721400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr4:148713800-148720400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:148714200-148720200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr4:148715000-148721000	Weak transcription	Right Atrium	heart
14	chr4:148715200-148719200	Weak transcription	Fetal Lung	lung
15	chr4:148715200-148720000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:148715200-148720200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr4:148715200-148721400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:148715200-148735200	Weak transcription	Stomach Mucosa	stomach
19	chr4:148715400-148718400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:148715400-148719400	Weak transcription	Psoas Muscle	Psoas
21	chr4:148715400-148719600	Weak transcription	Left Ventricle	heart
22	chr4:148715400-148719600	Weak transcription	Right Ventricle	heart
23	chr4:148715400-148720200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr4:148715400-148720200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:148715400-148720400	Weak transcription	Fetal Muscle Leg	muscle
26	chr4:148715400-148721200	Weak transcription	Gastric	stomach
27	chr4:148715400-148721200	Weak transcription	Ovary	ovary
28	chr4:148715400-148722800	Weak transcription	Fetal Heart	heart
29	chr4:148715600-148720000	Weak transcription	Colon Smooth Muscle	Colon
30	chr4:148715600-148720200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr4:148715800-148720000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr4:148716000-148720000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:148716000-148720200	Weak transcription	Duodenum Mucosa	Duodenum
34	chr4:148716000-148722800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:148716000-148734800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:148716200-148720200	Weak transcription	Adipose Nuclei	Adipose
37	chr4:148716400-148720200	Weak transcription	Primary T cells from cord blood	blood
38	chr4:148716400-148720400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr4:148716400-148720600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr4:148716400-148720600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:148716400-148720600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr4:148716400-148720800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr4:148716400-148720800	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:148716400-148721200	Weak transcription	Small Intestine	intestine
45	chr4:148716600-148720000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr4:148716600-148720200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr4:148716600-148720400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:148716600-148720400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr4:148716600-148720400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr4:148716600-148732800	Weak transcription	Fetal Intestine Small	intestine

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