Variant report

Variant	rs13136202
Chromosome Location	chr4:148698365-148698366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148692638..148695831-chr4:148697652..148700222,4	MCF-7	breast:
2	chr4:148697444..148700218-chr4:148710161..148711929,2	MCF-7	breast:
3	chr4:148651510..148654715-chr4:148697202..148699343,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071205	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10027921	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10032488	0.81[EUR][1000 genomes]
rs11099669	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11729081	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11944579	0.86[JPT][hapmap]
rs12645249	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12648074	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12650280	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13116955	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13134018	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1604785	0.81[EUR][1000 genomes]
rs17023770	0.85[JPT][hapmap]
rs2055551	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2118036	0.84[EUR][1000 genomes]
rs2134706	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6535558	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6535559	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6535561	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6822971	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6829479	0.81[EUR][1000 genomes]
rs6837391	0.81[EUR][1000 genomes]
rs6839987	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6845560	1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7673234	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7673606	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9332471	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs964170	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148689600-148700200	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:148689800-148699400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:148689800-148700400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:148693200-148700600	Enhancers	Colon Smooth Muscle	Colon
5	chr4:148693800-148699800	Enhancers	Skeletal Muscle Female	skeletal muscle
6	chr4:148694600-148699400	Enhancers	Fetal Muscle Leg	muscle
7	chr4:148694800-148708400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:148695000-148699600	Enhancers	Left Ventricle	heart
9	chr4:148695200-148698600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:148695200-148698600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:148695200-148698600	Weak transcription	Osteobl	bone
12	chr4:148695200-148701400	Weak transcription	Small Intestine	intestine
13	chr4:148695400-148707400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:148695600-148699200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:148695600-148699400	Weak transcription	Adipose Nuclei	Adipose
16	chr4:148695600-148700000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr4:148695600-148706400	Weak transcription	Fetal Stomach	stomach
18	chr4:148696000-148698600	Weak transcription	NH-A	brain
19	chr4:148696000-148698800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:148696000-148698800	Enhancers	Fetal Muscle Trunk	muscle
21	chr4:148696000-148699400	Enhancers	Fetal Heart	heart
22	chr4:148696200-148699200	Enhancers	Fetal Intestine Large	intestine
23	chr4:148696400-148700800	Enhancers	Right Ventricle	heart
24	chr4:148696600-148698800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr4:148696600-148699600	Enhancers	A549	lung
26	chr4:148697000-148698600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:148697000-148701600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:148697000-148706400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:148697400-148699800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:148697600-148699400	Enhancers	HSMMtube	muscle
31	chr4:148697600-148699600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:148697600-148700200	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr4:148697600-148702000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr4:148697800-148698400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:148697800-148698600	Genic enhancers	HSMM	muscle
36	chr4:148697800-148698800	Enhancers	Stomach Mucosa	stomach
37	chr4:148697800-148699200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:148697800-148699200	Genic enhancers	Aorta	Aorta
39	chr4:148697800-148699200	Enhancers	GM12878-XiMat	blood
40	chr4:148697800-148699400	Enhancers	Psoas Muscle	Psoas
41	chr4:148697800-148699400	Enhancers	Hela-S3	cervix
42	chr4:148697800-148699600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr4:148697800-148699600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:148697800-148699600	Enhancers	NHEK	skin
45	chr4:148697800-148699600	Enhancers	NHLF	lung
46	chr4:148697800-148699800	Enhancers	HUVEC	blood vessel
47	chr4:148697800-148700400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:148697800-148701000	Enhancers	Ovary	ovary
49	chr4:148698000-148698600	Weak transcription	Right Atrium	heart
50	chr4:148698000-148698800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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