Variant report

Variant	rs9332471
Chromosome Location	chr4:148694170-148694171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:148693468..148695247-chr4:148729923..148731609,2	K562	blood:
2	chr4:148649361..148653898-chr4:148687606..148694872,6	MCF-7	breast:
3	chr4:148691338..148693292-chr4:148693665..148695844,2	MCF-7	breast:
4	chr4:148692638..148695831-chr4:148697652..148700222,4	MCF-7	breast:
5	chr4:148692827..148694690-chr4:148699168..148701568,2	K562	blood:

Variant related genes	Relation type
ENSG00000071205	Chromatin interaction
ENSG00000240014	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10027921	0.84[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11099669	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1119887	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs11729081	0.92[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11944579	0.80[EUR][1000 genomes]
rs12502667	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs12640660	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12645249	0.92[ASW][hapmap];0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12648074	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12650280	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13116955	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13134018	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13136202	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13136624	0.81[AFR][1000 genomes]
rs13136858	0.82[AFR][1000 genomes]
rs1604785	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs17023770	0.88[TSI][hapmap];0.80[EUR][1000 genomes]
rs17023844	0.83[CHD][hapmap];0.89[JPT][hapmap]
rs2055551	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2118036	0.92[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.97[MKK][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes]
rs2134706	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.95[MKK][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2164527	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4835448	0.82[AMR][1000 genomes]
rs62330668	0.82[AMR][1000 genomes]
rs6535556	0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs6535558	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6535559	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6535560	0.99[AFR][1000 genomes]
rs6535561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6818043	0.80[EUR][1000 genomes]
rs6822971	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6836509	1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs6839987	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6840039	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6845560	0.92[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];0.96[LWK][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7673234	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7673606	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs964170	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028958	chr4:148377752-148793485	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv880242	chr4:148659137-148727355	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148679200-148696400	Weak transcription	Lung	lung
2	chr4:148687200-148696400	Weak transcription	Right Ventricle	heart
3	chr4:148689400-148698000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:148689600-148700200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr4:148689800-148699400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr4:148689800-148700400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:148690400-148695000	Enhancers	Fetal Heart	heart
8	chr4:148691200-148695600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:148691200-148696800	Enhancers	Psoas Muscle	Psoas
10	chr4:148691400-148694600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr4:148691400-148697800	Enhancers	Fetal Intestine Small	intestine
12	chr4:148691800-148694200	Enhancers	Fetal Muscle Leg	muscle
13	chr4:148692200-148696800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:148692400-148697600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:148692800-148695200	Enhancers	Stomach Mucosa	stomach
16	chr4:148692800-148695600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:148692800-148695600	Enhancers	NHDF-Ad	bronchial
18	chr4:148693000-148695000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr4:148693000-148695600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:148693000-148695800	Enhancers	Fetal Intestine Large	intestine
21	chr4:148693200-148694800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:148693200-148695000	Enhancers	GM12878-XiMat	blood
23	chr4:148693200-148695000	Flanking Active TSS	NHEK	skin
24	chr4:148693200-148695200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr4:148693200-148695200	Enhancers	A549	lung
26	chr4:148693200-148695200	Flanking Active TSS	NH-A	brain
27	chr4:148693200-148695600	Enhancers	Adipose Nuclei	Adipose
28	chr4:148693200-148695600	Enhancers	Fetal Stomach	stomach
29	chr4:148693200-148696000	Enhancers	HMEC	breast
30	chr4:148693200-148696400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:148693200-148697000	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr4:148693200-148700600	Enhancers	Colon Smooth Muscle	Colon
33	chr4:148693400-148694200	Flanking Active TSS	Osteobl	bone
34	chr4:148693400-148694800	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr4:148693400-148694800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr4:148693400-148695000	Flanking Active TSS	HUVEC	blood vessel
37	chr4:148693400-148695200	Enhancers	Fetal Lung	lung
38	chr4:148693400-148696000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr4:148693400-148697000	Enhancers	Duodenum Smooth Muscle	Duodenum
40	chr4:148693400-148697800	Weak transcription	Pancreas	Pancrea
41	chr4:148693600-148694200	Enhancers	Fetal Kidney	kidney
42	chr4:148693600-148694200	Enhancers	HSMMtube	muscle
43	chr4:148693600-148694400	Weak transcription	Small Intestine	intestine
44	chr4:148693600-148694400	Weak transcription	HSMM	muscle
45	chr4:148693600-148695000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:148693600-148695000	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr4:148693600-148695000	Weak transcription	Aorta	Aorta
48	chr4:148693600-148695400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:148693600-148695800	Enhancers	NHLF	lung
50	chr4:148693600-148696000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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