Variant report

Variant	rs10033565
Chromosome Location	chr4:62942494-62942495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LPHN3-8	chr4:62941880-62944064	NONHSAT096618

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10006606	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10013024	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10017162	0.84[EUR][1000 genomes]
rs10023749	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026213	0.84[ASN][1000 genomes]
rs10030005	0.94[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10032372	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11131359	0.86[EUR][1000 genomes]
rs12508665	0.81[EUR][1000 genomes]
rs12642767	0.83[ASN][1000 genomes]
rs12715706	0.88[AFR][1000 genomes]
rs12715707	0.80[AFR][1000 genomes]
rs12715708	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13108623	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13131251	0.83[ASN][1000 genomes]
rs13138506	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17082585	0.81[EUR][1000 genomes]
rs2193121	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2193122	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2216198	0.83[EUR][1000 genomes]
rs2344677	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3922274	0.95[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs58634974	0.85[EUR][1000 genomes]
rs6551682	0.85[EUR][1000 genomes]
rs66917394	0.85[ASN][1000 genomes]
rs67603454	0.85[ASN][1000 genomes]
rs6822974	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7667700	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7674516	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7696902	0.83[EUR][1000 genomes]
rs9991183	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012574	chr4:62844264-62954187	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv879078	chr4:62923797-63054757	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62936800-62943200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:62937000-62943200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:62939600-62943000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr4:62939800-62943000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:62940200-62942800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:62941000-62942800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr4:62942200-62942600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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