Variant report

Variant	rs66917394
Chromosome Location	chr4:62999959-62999960
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10006606	0.94[ASN][1000 genomes]
rs10013024	0.90[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs10017162	0.88[ASN][1000 genomes]
rs10023749	0.85[ASN][1000 genomes]
rs10030906	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10032372	0.85[ASN][1000 genomes]
rs10033565	0.85[ASN][1000 genomes]
rs11131359	0.91[ASN][1000 genomes]
rs12499999	0.82[ASN][1000 genomes]
rs12642767	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12645804	0.84[ASN][1000 genomes]
rs12715708	0.97[ASN][1000 genomes]
rs13108623	0.85[ASN][1000 genomes]
rs13122283	0.81[ASN][1000 genomes]
rs13138506	0.96[ASN][1000 genomes]
rs17082585	0.85[ASN][1000 genomes]
rs2193118	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2193121	0.99[ASN][1000 genomes]
rs2193122	0.99[ASN][1000 genomes]
rs2216198	0.88[ASN][1000 genomes]
rs2344677	0.96[ASN][1000 genomes]
rs3922274	0.84[ASN][1000 genomes]
rs4397024	0.85[ASN][1000 genomes]
rs4446347	0.86[ASN][1000 genomes]
rs4464598	0.82[ASN][1000 genomes]
rs4510488	0.83[ASN][1000 genomes]
rs4549412	0.83[ASN][1000 genomes]
rs4860107	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4860454	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58634974	0.89[ASN][1000 genomes]
rs6551678	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6551682	0.89[ASN][1000 genomes]
rs67603454	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814490	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6822974	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7664211	0.85[ASN][1000 genomes]
rs7667700	0.94[ASN][1000 genomes]
rs7674516	0.85[ASN][1000 genomes]
rs7696902	0.88[ASN][1000 genomes]
rs9991183	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879078	chr4:62923797-63054757	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv594332	chr4:62976756-63034074	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1005620	chr4:62978115-63035387	Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1013327	chr4:62989426-63149048	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62999000-63000400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:62999000-63001200	Enhancers	NH-A	brain
3	chr4:62999200-63003400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:62999400-63000800	Active TSS	Left Ventricle	heart
5	chr4:62999400-63001800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:62999400-63001800	Active TSS	Right Ventricle	heart
7	chr4:62999400-63002800	Active TSS	Right Atrium	heart
8	chr4:62999600-63000200	Flanking Active TSS	Fetal Heart	heart
9	chr4:62999600-63000600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:62999800-63000600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:62999800-63000800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:62999800-63001800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr4:62999800-63002600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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