Variant report

Variant	rs4549412
Chromosome Location	chr4:63063095-63063096
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10006606	0.80[ASN][1000 genomes]
rs10013024	0.84[ASN][1000 genomes]
rs10017162	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs10030906	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11131359	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12642767	0.81[ASN][1000 genomes]
rs12645804	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs12715708	0.83[ASN][1000 genomes]
rs13138506	0.82[ASN][1000 genomes]
rs1563796	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17082585	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs17292247	0.82[ASN][1000 genomes]
rs2193118	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2193121	0.84[ASN][1000 genomes]
rs2193122	0.84[ASN][1000 genomes]
rs2216198	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2344677	0.82[ASN][1000 genomes]
rs4397024	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4446347	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4453963	0.84[ASN][1000 genomes]
rs4464598	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4510488	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4860107	0.90[ASN][1000 genomes]
rs4860454	0.94[ASN][1000 genomes]
rs58634974	0.91[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6551678	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6551682	0.91[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6551685	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6551686	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs66917394	0.83[ASN][1000 genomes]
rs67603454	0.83[ASN][1000 genomes]
rs6814490	0.91[ASN][1000 genomes]
rs6822974	0.83[ASN][1000 genomes]
rs7664211	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7667700	0.80[ASN][1000 genomes]
rs7696902	0.96[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013327	chr4:62989426-63149048	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1012093	chr4:63014592-63568580	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537113	chr4:63014592-63568580	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv534618	chr4:63025655-63568620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv997505	chr4:63025663-63575696	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv594333	chr4:63025823-63467034	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv461378	chr4:63037324-63158560	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
8	nsv594334	chr4:63037324-63158560	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
9	nsv1013850	chr4:63049885-63568580	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv537114	chr4:63049885-63568580	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv594335	chr4:63054757-63183246	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	nsv879079	chr4:63059672-63184850	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:63057400-63064600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:63059800-63075600	Weak transcription	Fetal Heart	heart

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