Variant report

Variant	rs10033843
Chromosome Location	chr4:77028783-77028784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77027487..77029799-chr4:77068169..77070683,2	K562	blood:
2	chr4:76961032..76963158-chr4:77027696..77030643,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM47E-2	chr4:77028369-77028946	NONHSAT096978

Variant related genes	Relation type
ENSG00000138750	Chromatin interaction
ENSG00000169248	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11097236	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11097237	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1127705	0.81[ASN][1000 genomes]
rs12499900	0.83[JPT][hapmap]
rs12510869	1.00[CHB][hapmap];0.93[JPT][hapmap];0.99[ASN][1000 genomes]
rs13130116	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13136760	0.94[ASN][1000 genomes]
rs13141802	0.81[ASN][1000 genomes]
rs17001409	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17001416	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs34978911	0.81[ASN][1000 genomes]
rs35713908	0.81[ASN][1000 genomes]
rs4241584	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4416502	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4859422	1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs4859423	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4859425	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs4859426	0.86[JPT][hapmap]
rs4859617	0.80[ASN][1000 genomes]
rs4859618	0.80[ASN][1000 genomes]
rs59050354	0.81[ASN][1000 genomes]
rs6836703	0.81[AFR][1000 genomes]
rs6838328	0.81[AFR][1000 genomes]
rs7668413	0.86[AFR][1000 genomes]
rs7673428	0.82[ASN][1000 genomes]
rs7678836	0.88[AFR][1000 genomes]
rs7689378	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77017000-77034400	Weak transcription	Right Ventricle	heart
2	chr4:77024000-77032200	Weak transcription	Left Ventricle	heart
3	chr4:77026400-77033400	Weak transcription	HSMMtube	muscle
4	chr4:77026600-77033400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:77027200-77033000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:77027200-77033400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:77027200-77034000	Weak transcription	Brain Anterior Caudate	brain
8	chr4:77027200-77034400	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:77027200-77035400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr4:77027600-77033400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr4:77027600-77034200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr4:77027600-77034400	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:77027600-77037400	Weak transcription	Brain Substantia Nigra	brain
14	chr4:77027800-77034200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:77027800-77034200	Weak transcription	Fetal Brain Female	brain
16	chr4:77027800-77036400	Weak transcription	Brain Angular Gyrus	brain
17	chr4:77027800-77038400	Weak transcription	Fetal Brain Male	brain
18	chr4:77028000-77033200	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr4:77028000-77034000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:77028000-77037600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:77028000-77068600	Weak transcription	Gastric	stomach
22	chr4:77028400-77033200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:77028400-77033400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr4:77028400-77034400	Weak transcription	K562	blood

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