Variant report

Variant	rs4859422
Chromosome Location	chr4:77012600-77012601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10033843	1.00[CHB][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs11097237	0.97[ASN][1000 genomes]
rs1127705	0.86[AFR][1000 genomes]
rs12510869	0.84[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13130116	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13134121	0.96[YRI][hapmap]
rs13136760	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17001357	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17001409	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17001416	0.86[YRI][hapmap]
rs4077787	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4859423	0.84[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4859425	0.88[YRI][hapmap]
rs66828967	0.84[AFR][1000 genomes]
rs6829592	0.83[YRI][hapmap]
rs6856609	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77008400-77014200	Weak transcription	Pancreas	Pancrea
2	chr4:77008600-77016800	Weak transcription	Psoas Muscle	Psoas
3	chr4:77010400-77012800	Enhancers	Hela-S3	cervix
4	chr4:77011200-77012600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:77011200-77012800	Enhancers	HMEC	breast
6	chr4:77011400-77012600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:77011600-77012600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:77011600-77012800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:77011800-77012600	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr4:77011800-77012600	Enhancers	K562	blood
11	chr4:77012200-77012800	Enhancers	NHEK	skin
12	chr4:77012400-77015600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:77012400-77015600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:77012600-77014400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:77012600-77016200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:77012600-77016800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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