Variant report

Variant	rs13134121
Chromosome Location	chr4:77009181-77009182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:76982557..76984766-chr4:77008579..77010146,2	K562	blood:
2	chr4:77006287..77011420-chr4:77011515..77015802,5	K562	blood:
3	chr4:76931634..76933510-chr4:77007552..77010198,2	K562	blood:

Variant related genes	Relation type
ENSG00000156219	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12510869	0.91[YRI][hapmap]
rs13130116	0.87[YRI][hapmap]
rs13134119	0.90[AFR][1000 genomes]
rs17001357	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs17001409	0.88[YRI][hapmap]
rs17001416	0.80[YRI][hapmap]
rs4077787	0.96[YRI][hapmap];0.84[AFR][1000 genomes]
rs4859422	0.96[YRI][hapmap]
rs4859423	0.87[YRI][hapmap]
rs4859425	0.87[YRI][hapmap]
rs66828967	0.84[AFR][1000 genomes]
rs6829592	0.85[YRI][hapmap]
rs6847950	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6856609	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77008000-77009200	Enhancers	HepG2	liver
2	chr4:77008000-77009400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr4:77008000-77009400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:77008400-77009200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:77008400-77011200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:77008400-77011200	Weak transcription	HMEC	breast
7	chr4:77008400-77011400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:77008400-77014200	Weak transcription	Pancreas	Pancrea
9	chr4:77008600-77010000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr4:77008600-77010600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:77008600-77010600	Weak transcription	HUVEC	blood vessel
12	chr4:77008600-77011200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:77008600-77011200	Weak transcription	K562	blood
14	chr4:77008600-77011400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:77008600-77011600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:77008600-77011600	Weak transcription	Osteobl	bone
17	chr4:77008600-77016800	Weak transcription	Psoas Muscle	Psoas
18	chr4:77008800-77009200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:77008800-77009200	Enhancers	Brain Cingulate Gyrus	brain
20	chr4:77008800-77011200	Weak transcription	NHEK	skin
21	chr4:77008800-77011600	Weak transcription	Fetal Heart	heart
22	chr4:77009000-77010400	Weak transcription	Hela-S3	cervix
23	chr4:77009000-77011400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr4:77009000-77011600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:77009000-77011600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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