Variant report

Variant	rs10034028
Chromosome Location	chr4:84485527-84485528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10008545	0.88[AFR][1000 genomes]
rs10034287	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28660117	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6835481	0.94[AFR][1000 genomes]
rs6837457	0.88[AFR][1000 genomes]
rs6838051	0.85[AFR][1000 genomes]
rs6839339	0.88[AFR][1000 genomes]
rs6845470	0.88[AFR][1000 genomes]
rs9992349	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829994	chr4:84366299-84558316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84480200-84489400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:84481200-84503200	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:84482000-84488800	Weak transcription	Left Ventricle	heart
4	chr4:84482800-84490400	Weak transcription	Psoas Muscle	Psoas
5	chr4:84482800-84503400	Weak transcription	Ovary	ovary
6	chr4:84483000-84490600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:84483200-84490600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:84484200-84488200	Weak transcription	A549	lung
9	chr4:84485000-84485800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:84485000-84486000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:84485200-84485600	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr4:84485200-84485800	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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