Variant report

Variant	rs6839339
Chromosome Location	chr4:84482087-84482088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10008545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10034028	0.88[AFR][1000 genomes]
rs10034287	0.87[AFR][1000 genomes]
rs28660117	0.87[AFR][1000 genomes]
rs56918169	1.00[AMR][1000 genomes]
rs6835481	0.83[AFR][1000 genomes]
rs6837457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6838051	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7340805	1.00[AMR][1000 genomes]
rs7659966	1.00[AMR][1000 genomes]
rs9998769	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829994	chr4:84366299-84558316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84473000-84483000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr4:84474800-84482600	Weak transcription	Osteobl	bone
3	chr4:84476200-84483400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr4:84478000-84483200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:84479000-84482800	Enhancers	A549	lung
6	chr4:84479800-84482200	Weak transcription	NHLF	lung
7	chr4:84479800-84484400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:84480000-84482400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:84480000-84482400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:84480000-84482400	Weak transcription	NHEK	skin
11	chr4:84480000-84482600	Weak transcription	NHDF-Ad	bronchial
12	chr4:84480000-84483600	Weak transcription	NH-A	brain
13	chr4:84480200-84483200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr4:84480200-84489400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr4:84480400-84483000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr4:84480600-84482200	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:84480800-84482200	Enhancers	Psoas Muscle	Psoas
18	chr4:84481200-84503200	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:84481400-84485000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr4:84481600-84483200	Enhancers	Hela-S3	cervix
21	chr4:84481800-84482400	Enhancers	Fetal Heart	heart
22	chr4:84481800-84483000	Enhancers	Right Ventricle	heart
23	chr4:84481800-84483200	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr4:84482000-84482200	Enhancers	Ovary	ovary
25	chr4:84482000-84482400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:84482000-84483000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:84482000-84483000	Enhancers	HUVEC	blood vessel
28	chr4:84482000-84483200	Enhancers	HMEC	breast
29	chr4:84482000-84488800	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links