Variant report

Variant	rs9998769
Chromosome Location	chr4:84479588-84479589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:84478602..84481409-chr4:84484518..84487329,3	K562	blood:
2	chr4:84469977..84471889-chr4:84477743..84480547,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10008545	0.81[AFR][1000 genomes]
rs6837457	0.81[AFR][1000 genomes]
rs6839339	0.81[AFR][1000 genomes]
rs6845470	0.81[AFR][1000 genomes]
rs9992349	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829994	chr4:84366299-84558316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84458600-84482000	Weak transcription	Ovary	ovary
2	chr4:84461000-84481800	Weak transcription	Right Ventricle	heart
3	chr4:84473000-84483000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr4:84473200-84481400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:84474400-84479600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:84474400-84479600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:84474600-84479600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:84474600-84479600	Weak transcription	GM12878-XiMat	blood
9	chr4:84474800-84479600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:84474800-84479600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr4:84474800-84479600	Weak transcription	NH-A	brain
12	chr4:84474800-84482600	Weak transcription	Osteobl	bone
13	chr4:84476200-84480000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr4:84476200-84480200	Enhancers	Hela-S3	cervix
15	chr4:84476200-84483400	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr4:84476400-84480200	Enhancers	K562	blood
17	chr4:84476400-84481600	Enhancers	Primary hematopoietic stem cells	blood
18	chr4:84476600-84481200	Weak transcription	Left Ventricle	heart
19	chr4:84477000-84479600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:84477600-84481800	Weak transcription	Fetal Heart	heart
21	chr4:84477800-84480200	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr4:84478000-84483200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:84478200-84480000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:84478200-84480200	Enhancers	HMEC	breast
25	chr4:84478600-84479800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:84479000-84482800	Enhancers	A549	lung
27	chr4:84479200-84479600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr4:84479200-84480800	Weak transcription	Psoas Muscle	Psoas
29	chr4:84479400-84479600	Enhancers	Right Atrium	heart
30	chr4:84479400-84479800	Enhancers	HUVEC	blood vessel
31	chr4:84479400-84479800	Enhancers	NHLF	lung
32	chr4:84479400-84480000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:84479400-84480000	Enhancers	NHDF-Ad	bronchial
34	chr4:84479400-84480000	Enhancers	NHEK	skin
35	chr4:84479400-84480200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr4:84479400-84480400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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