Variant report

Variant	rs7340805
Chromosome Location	chr4:84492120-84492121
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10008545	1.00[AMR][1000 genomes]
rs56918169	1.00[AMR][1000 genomes]
rs6837457	1.00[AMR][1000 genomes]
rs6838051	1.00[AMR][1000 genomes]
rs6839339	1.00[AMR][1000 genomes]
rs6845470	1.00[AMR][1000 genomes]
rs7659966	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829994	chr4:84366299-84558316	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv879512	chr4:84374692-85090749	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1010009	chr4:84469896-84882528	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv964299	chr4:84490085-84499608	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:84481200-84503200	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:84482800-84503400	Weak transcription	Ovary	ovary
3	chr4:84486000-84513000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:84488600-84516800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:84489400-84503400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:84489800-84492200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:84489800-84499600	Weak transcription	Fetal Lung	lung
8	chr4:84490200-84492200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr4:84490600-84492200	Enhancers	Primary B cells from peripheral blood	blood
10	chr4:84490800-84502800	Weak transcription	Left Ventricle	heart
11	chr4:84491000-84494000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr4:84491200-84494000	Weak transcription	Fetal Heart	heart
13	chr4:84491200-84494600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:84491200-84495200	Weak transcription	Adipose Nuclei	Adipose
15	chr4:84491400-84498000	Weak transcription	Right Atrium	heart
16	chr4:84491600-84494400	Weak transcription	Psoas Muscle	Psoas
17	chr4:84491600-84495200	Weak transcription	A549	lung
18	chr4:84491600-84502800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:84491600-84503200	Weak transcription	HMEC	breast
20	chr4:84491800-84493200	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr4:84492000-84492600	Enhancers	Primary neutrophils fromperipheralblood	blood
22	chr4:84492000-84512200	Weak transcription	NHEK	skin

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