Variant report

Variant	rs10034567
Chromosome Location	chr4:96957449-96957450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10006738	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10015131	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1514975	0.96[ASN][1000 genomes]
rs1514976	0.86[ASN][1000 genomes]
rs1514977	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17025053	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1877917	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1877918	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1877919	0.86[ASN][1000 genomes]
rs2203442	0.93[ASN][1000 genomes]
rs7665689	0.93[ASN][1000 genomes]
rs925724	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9998845	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96956600-96957800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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