Variant report

Variant	rs1514977
Chromosome Location	chr4:96965646-96965647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10006738	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10015131	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10034567	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1514975	1.00[ASN][1000 genomes]
rs1514976	0.90[ASN][1000 genomes]
rs17025053	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1877917	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1877918	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1877919	0.90[ASN][1000 genomes]
rs2203442	0.96[ASN][1000 genomes]
rs7665689	0.96[ASN][1000 genomes]
rs925724	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9998845	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594915	chr4:96628653-97086618	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv879630	chr4:96961891-97047829	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96965200-96971400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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