Variant report

Variant	rs10035072
Chromosome Location	chr4:87082793-87082794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87074554..87076995-chr4:87081060..87082909,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10004539	1.00[CHB][hapmap]
rs10010011	0.86[CHB][hapmap]
rs10022904	1.00[CHB][hapmap]
rs10026060	1.00[CHB][hapmap]
rs10027764	0.86[CHB][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10213451	1.00[CHB][hapmap]
rs10213453	1.00[CHB][hapmap]
rs10516769	1.00[CHB][hapmap]
rs1108429	1.00[CHB][hapmap]
rs12639693	0.86[CHB][hapmap]
rs12640392	0.85[CHB][hapmap]
rs12650052	1.00[CHB][hapmap]
rs1460761	0.86[CHB][hapmap]
rs1599314	1.00[CHB][hapmap]
rs17011460	1.00[CHB][hapmap]
rs17011540	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17011547	1.00[CHB][hapmap]
rs17011584	1.00[CHB][hapmap]
rs17011592	1.00[CHB][hapmap]
rs17011655	0.81[JPT][hapmap]
rs1903360	0.86[CHB][hapmap]
rs1903361	1.00[CHB][hapmap]
rs2035058	0.82[CHB][hapmap]
rs28709251	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2904090	1.00[CHB][hapmap]
rs4132490	0.86[CHB][hapmap]
rs59773783	1.00[ASN][1000 genomes]
rs6844363	0.85[CHB][hapmap]
rs72662086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72662093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7678480	1.00[CHB][hapmap]
rs7685683	1.00[CHB][hapmap]
rs9307016	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs9997633	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1005338	chr4:87023398-87108555	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2757070	chr4:87075759-87138765	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	esv2759263	chr4:87075759-87138765	Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87052000-87114200	Weak transcription	Ovary	ovary
2	chr4:87078000-87086200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:87078000-87113400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:87080800-87085000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:87080800-87086600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:87081400-87083200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr4:87082000-87082800	Enhancers	Brain Anterior Caudate	brain
8	chr4:87082000-87083200	Enhancers	Brain Cingulate Gyrus	brain
9	chr4:87082200-87082800	Enhancers	Brain Angular Gyrus	brain
10	chr4:87082400-87083000	Enhancers	Brain Substantia Nigra	brain
11	chr4:87082600-87082800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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