Variant report

Variant	rs10035519
Chromosome Location	chr5:124369984-124369985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28379635	0.82[AFR][1000 genomes]
rs6874077	0.86[YRI][hapmap]
rs73308734	1.00[EUR][1000 genomes]
rs73308739	0.92[AFR][1000 genomes]
rs7715420	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124363400-124377600	Weak transcription	Fetal Kidney	kidney
2	chr5:124363600-124370000	Weak transcription	Stomach Mucosa	stomach
3	chr5:124365400-124379400	Weak transcription	Pancreas	Pancrea
4	chr5:124368400-124370800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr5:124368600-124371000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr5:124368800-124370800	Enhancers	Dnd41	blood
7	chr5:124369000-124371600	Weak transcription	Adipose Nuclei	Adipose
8	chr5:124369200-124370000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:124369600-124370200	Enhancers	Duodenum Mucosa	Duodenum
10	chr5:124369800-124370000	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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