Variant report

Variant	rs28379635
Chromosome Location	chr5:124368948-124368949
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10035519	0.82[AFR][1000 genomes]
rs10036117	0.83[EUR][1000 genomes]
rs10037351	0.83[EUR][1000 genomes]
rs10039152	0.83[EUR][1000 genomes]
rs10051515	0.83[EUR][1000 genomes]
rs10051816	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10051865	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10056903	0.83[EUR][1000 genomes]
rs10059682	0.83[EUR][1000 genomes]
rs10059820	1.00[EUR][1000 genomes]
rs10061638	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10065416	0.83[EUR][1000 genomes]
rs10076719	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10076822	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10223088	0.83[EUR][1000 genomes]
rs10478646	0.83[EUR][1000 genomes]
rs28421593	0.83[EUR][1000 genomes]
rs28442881	0.83[EUR][1000 genomes]
rs28469490	0.83[EUR][1000 genomes]
rs56878962	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081045	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60582094	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862844	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862998	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867051	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867249	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870217	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6874077	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6874416	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6875818	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6891699	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306728	0.83[EUR][1000 genomes]
rs73306768	0.83[EUR][1000 genomes]
rs73308739	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124363400-124377600	Weak transcription	Fetal Kidney	kidney
2	chr5:124363600-124370000	Weak transcription	Stomach Mucosa	stomach
3	chr5:124365400-124379400	Weak transcription	Pancreas	Pancrea
4	chr5:124365800-124369600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:124367000-124369000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:124367600-124369000	Enhancers	Adipose Nuclei	Adipose
7	chr5:124367800-124369000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:124368200-124369800	Weak transcription	NHDF-Ad	bronchial
9	chr5:124368400-124370800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:124368600-124371000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:124368800-124369200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:124368800-124370800	Enhancers	Dnd41	blood

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