Variant report

Variant	rs10478646
Chromosome Location	chr5:124356473-124356474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10037351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10039152	1.00[EUR][1000 genomes]
rs10045792	1.00[AMR][1000 genomes]
rs10051515	1.00[EUR][1000 genomes]
rs10051816	0.83[EUR][1000 genomes]
rs10051865	0.83[EUR][1000 genomes]
rs10056903	1.00[EUR][1000 genomes]
rs10059820	0.83[EUR][1000 genomes]
rs10061638	0.83[EUR][1000 genomes]
rs10076719	0.83[EUR][1000 genomes]
rs10076822	0.83[EUR][1000 genomes]
rs10223088	1.00[EUR][1000 genomes]
rs28379635	0.83[EUR][1000 genomes]
rs28442881	1.00[EUR][1000 genomes]
rs28469490	1.00[EUR][1000 genomes]
rs56878962	0.83[EUR][1000 genomes]
rs60081045	0.83[EUR][1000 genomes]
rs60582094	0.83[EUR][1000 genomes]
rs6862844	0.83[EUR][1000 genomes]
rs6862998	0.83[EUR][1000 genomes]
rs6867051	0.83[EUR][1000 genomes]
rs6867249	0.83[EUR][1000 genomes]
rs6870217	0.83[EUR][1000 genomes]
rs6874077	0.83[EUR][1000 genomes]
rs6874416	0.83[EUR][1000 genomes]
rs6875818	0.83[EUR][1000 genomes]
rs6886619	1.00[AMR][1000 genomes]
rs6891699	0.83[EUR][1000 genomes]
rs73306728	1.00[EUR][1000 genomes]
rs73306768	1.00[EUR][1000 genomes]
rs73308739	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124354000-124361600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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