Variant report

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10037351	1.00[EUR][1000 genomes]
rs10039152	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10051515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10051816	0.83[EUR][1000 genomes]
rs10051865	0.83[EUR][1000 genomes]
rs10056903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10059820	0.83[EUR][1000 genomes]
rs10061638	0.83[EUR][1000 genomes]
rs10076719	0.83[EUR][1000 genomes]
rs10076822	0.83[EUR][1000 genomes]
rs10223088	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10478646	1.00[EUR][1000 genomes]
rs28379635	0.83[EUR][1000 genomes]
rs28442881	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28469490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56878962	0.83[EUR][1000 genomes]
rs60081045	0.83[EUR][1000 genomes]
rs60582094	0.83[EUR][1000 genomes]
rs6862844	0.83[EUR][1000 genomes]
rs6862998	0.83[EUR][1000 genomes]
rs6867051	0.83[EUR][1000 genomes]
rs6867249	0.83[EUR][1000 genomes]
rs6870217	0.83[EUR][1000 genomes]
rs6874077	0.83[EUR][1000 genomes]
rs6874416	0.83[EUR][1000 genomes]
rs6875818	0.83[EUR][1000 genomes]
rs6891699	0.83[EUR][1000 genomes]
rs73306728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73308739	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124346800-124352000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr5:124346800-124352200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:124347800-124353400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:124349000-124353000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:124349000-124353200	Weak transcription	Stomach Mucosa	stomach
6	chr5:124349000-124353400	Weak transcription	HepG2	liver
7	chr5:124349200-124353200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:124349200-124353600	Weak transcription	Pancreas	Pancrea
9	chr5:124351000-124352000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:124351000-124352000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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