Variant report

Variant	rs6875818
Chromosome Location	chr5:124362656-124362657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10035519	0.85[YRI][hapmap]
rs10036117	0.83[EUR][1000 genomes]
rs10037351	0.83[EUR][1000 genomes]
rs10039152	0.83[EUR][1000 genomes]
rs10051515	0.83[EUR][1000 genomes]
rs10051816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10051865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10056903	0.83[EUR][1000 genomes]
rs10059682	0.83[EUR][1000 genomes]
rs10059820	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10061638	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10065416	0.83[EUR][1000 genomes]
rs10076719	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10076822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10223088	0.83[EUR][1000 genomes]
rs10478646	0.83[EUR][1000 genomes]
rs28379635	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28421593	0.83[EUR][1000 genomes]
rs28442881	0.83[EUR][1000 genomes]
rs28469490	0.83[EUR][1000 genomes]
rs56878962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60081045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60582094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6862998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6867249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6874077	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6874416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6891699	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73306728	0.83[EUR][1000 genomes]
rs73306768	0.83[EUR][1000 genomes]
rs73308739	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3365202	chr5:124362653-124365251	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124361000-124363400	Enhancers	Fetal Intestine Small	intestine
2	chr5:124361000-124363600	Enhancers	Fetal Intestine Large	intestine
3	chr5:124362000-124363400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:124362200-124363000	Enhancers	Duodenum Mucosa	Duodenum
5	chr5:124362200-124363200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:124362200-124363200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:124362400-124363200	Enhancers	H1 Cell Line	embryonic stem cell
8	chr5:124362400-124363200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr5:124362400-124363400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:124362400-124363400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr5:124362400-124363400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:124362400-124363400	Enhancers	Pancreas	Pancrea
13	chr5:124362400-124363600	Enhancers	Adipose Nuclei	Adipose
14	chr5:124362400-124363600	Enhancers	Liver	Liver
15	chr5:124362400-124363600	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr5:124362400-124363600	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr5:124362400-124363800	Enhancers	Fetal Heart	heart
18	chr5:124362600-124363000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:124362600-124363000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr5:124362600-124363400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr5:124362600-124363400	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr5:124362600-124363400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr5:124362600-124363400	Enhancers	Fetal Kidney	kidney
24	chr5:124362600-124363400	Enhancers	Pancreatic Islets	Pancreatic Islet
25	chr5:124362600-124363400	Enhancers	Placenta Amnion	Placenta Amnion
26	chr5:124362600-124363400	Enhancers	Dnd41	blood
27	chr5:124362600-124363600	Enhancers	Stomach Mucosa	stomach

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