Variant report

Variant	rs10059682
Chromosome Location	chr5:124364315-124364316
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10036117	1.00[EUR][1000 genomes]
rs10051816	0.83[EUR][1000 genomes]
rs10051865	0.83[EUR][1000 genomes]
rs10059820	0.83[EUR][1000 genomes]
rs10061638	0.83[EUR][1000 genomes]
rs10065416	1.00[EUR][1000 genomes]
rs10076719	0.83[EUR][1000 genomes]
rs10076822	0.83[EUR][1000 genomes]
rs28379635	0.83[EUR][1000 genomes]
rs28421593	1.00[EUR][1000 genomes]
rs56878962	0.83[EUR][1000 genomes]
rs60081045	0.83[EUR][1000 genomes]
rs60582094	0.83[EUR][1000 genomes]
rs6862844	0.83[EUR][1000 genomes]
rs6862998	0.83[EUR][1000 genomes]
rs6867051	0.83[EUR][1000 genomes]
rs6867249	0.83[EUR][1000 genomes]
rs6870217	0.83[EUR][1000 genomes]
rs6874077	0.83[EUR][1000 genomes]
rs6874416	0.83[EUR][1000 genomes]
rs6875818	0.83[EUR][1000 genomes]
rs6891699	0.83[EUR][1000 genomes]
rs73308739	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882822	chr5:124250018-124449375	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830474	chr5:124263628-124431299	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3365202	chr5:124362653-124365251	Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
4	esv2541376	chr5:124363227-124364813	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv2268153	chr5:124363645-124364371	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124363000-124368000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:124363000-124368200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:124363400-124365000	Weak transcription	Pancreas	Pancrea
4	chr5:124363400-124367000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:124363400-124367800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:124363400-124367800	Weak transcription	Gastric	stomach
7	chr5:124363400-124377600	Weak transcription	Fetal Kidney	kidney
8	chr5:124363600-124364800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:124363600-124367600	Weak transcription	Adipose Nuclei	Adipose
10	chr5:124363600-124370000	Weak transcription	Stomach Mucosa	stomach
11	chr5:124363800-124365000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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