Variant report

Variant	rs10036675
Chromosome Location	chr5:107505130-107505131
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10515385	0.94[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs10515388	0.94[CEU][hapmap];0.88[TSI][hapmap]
rs11242664	0.94[CEU][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs12652675	0.94[CEU][hapmap]
rs12653027	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs12654140	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs12657542	0.93[EUR][1000 genomes]
rs17161193	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs17385914	0.94[CEU][hapmap];0.84[EUR][1000 genomes]
rs17386492	0.94[CEU][hapmap]
rs17387645	0.94[CEU][hapmap]
rs17388244	0.94[CEU][hapmap]
rs17450705	0.94[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs17451397	0.89[CEU][hapmap]
rs17452357	0.94[CEU][hapmap]
rs17452992	0.94[CEU][hapmap]
rs2416528	0.84[EUR][1000 genomes]
rs4129424	0.94[CEU][hapmap];0.85[EUR][1000 genomes]
rs4364376	0.94[CEU][hapmap];0.94[TSI][hapmap]
rs56044682	0.86[EUR][1000 genomes]
rs61603913	0.86[EUR][1000 genomes]
rs6880005	0.94[CEU][hapmap]
rs6888190	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs73214536	0.84[EUR][1000 genomes]
rs7724245	0.94[CEU][hapmap]
rs7724860	0.94[CEU][hapmap]
rs7724884	0.94[CEU][hapmap]
rs7733036	0.94[CEU][hapmap]
rs888792	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107388400-107510800	Weak transcription	Primary B cells from cord blood	blood
2	chr5:107474600-107511000	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107475200-107527400	Weak transcription	Liver	Liver
4	chr5:107475800-107510400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:107476000-107535600	Weak transcription	Left Ventricle	heart
6	chr5:107480800-107521000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:107482000-107510800	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:107492200-107519800	Weak transcription	Ovary	ovary
9	chr5:107495400-107548800	Weak transcription	Pancreas	Pancrea
10	chr5:107496800-107528800	Weak transcription	Aorta	Aorta
11	chr5:107502800-107505600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr5:107502800-107505600	Enhancers	Fetal Heart	heart
13	chr5:107503400-107505600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr5:107504000-107505400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:107504400-107505600	Enhancers	Brain Cingulate Gyrus	brain
16	chr5:107504400-107505600	Enhancers	Fetal Brain Male	brain
17	chr5:107504600-107505200	Enhancers	Fetal Brain Female	brain
18	chr5:107504800-107508200	Weak transcription	Brain Angular Gyrus	brain
19	chr5:107504800-107510400	Weak transcription	Fetal Lung	lung
20	chr5:107504800-107525200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr5:107505000-107505800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr5:107505000-107508000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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