Variant report

Variant	rs56044682
Chromosome Location	chr5:107560769-107560770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107560160..107562056-chr5:107581004..107583478,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10036675	0.86[EUR][1000 genomes]
rs10061044	0.81[ASN][1000 genomes]
rs10515385	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10515388	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11242664	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12652675	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12653027	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653689	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12654140	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657542	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12659437	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17161193	0.84[EUR][1000 genomes]
rs17385914	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17386492	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17386875	0.87[ASN][1000 genomes]
rs17387645	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17388244	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17450705	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17451397	0.85[EUR][1000 genomes]
rs17452357	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17452992	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2052463	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2416528	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4129424	0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4364376	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55755463	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56855707	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58131807	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58212758	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58844678	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61603913	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6870480	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6880005	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888190	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72791270	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73214528	1.00[ASN][1000 genomes]
rs73214536	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7703032	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7711717	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7724245	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7724860	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7724884	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733036	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs888792	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107516200-107584800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr5:107517000-107571800	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr5:107546600-107590800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr5:107547000-107577200	Weak transcription	Fetal Intestine Large	intestine
5	chr5:107549200-107578000	Weak transcription	Pancreas	Pancrea
6	chr5:107549400-107561200	Weak transcription	Fetal Intestine Small	intestine
7	chr5:107550200-107561400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr5:107551200-107569000	Weak transcription	Primary T cells from cord blood	blood
9	chr5:107551400-107561600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:107551800-107567200	Weak transcription	Primary B cells from cord blood	blood
11	chr5:107551800-107568800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:107551800-107569600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:107552000-107578800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:107552000-107585000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:107553000-107575400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr5:107553000-107584800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr5:107553400-107590800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr5:107554600-107574200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr5:107556200-107561000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:107556200-107561600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr5:107556200-107566000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr5:107556400-107580200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr5:107557200-107568800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr5:107558000-107581000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr5:107558200-107561600	Weak transcription	Right Ventricle	heart
26	chr5:107559400-107563800	Weak transcription	Ovary	ovary
27	chr5:107559800-107568800	Weak transcription	NHDF-Ad	bronchial
28	chr5:107560200-107568600	Weak transcription	Fetal Heart	heart

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