Variant report

Variant	rs10037614
Chromosome Location	chr5:178335173-178335174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10035741	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10039203	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10039702	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10041805	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10043597	0.87[EUR][1000 genomes]
rs10059618	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10059708	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10068330	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10068408	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10074505	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10223205	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12657785	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1963050	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2411991	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61747996	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6874421	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6877197	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72814700	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72814702	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72816603	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72816608	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72816609	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72816613	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72816625	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72816629	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72816634	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3470830	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3470831	chr5:178334452-178339256	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10037614	ZNF454	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178323600-178335400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:178323800-178336200	Weak transcription	Right Ventricle	heart
3	chr5:178323800-178336400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:178333000-178335800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:178333400-178335600	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:178333400-178335600	Weak transcription	Brain Substantia Nigra	brain
7	chr5:178333400-178335600	Weak transcription	Left Ventricle	heart
8	chr5:178333400-178335800	Weak transcription	Gastric	stomach
9	chr5:178333400-178336000	Weak transcription	Brain Angular Gyrus	brain
10	chr5:178333400-178336200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr5:178333400-178336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:178333400-178336200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:178334800-178336000	Weak transcription	Ovary	ovary

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