Variant report

Variant	rs72816634
Chromosome Location	chr5:178346116-178346117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10035741	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10037614	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10039203	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10039702	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10041805	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10059618	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10059708	0.83[AMR][1000 genomes]
rs10074505	0.81[AMR][1000 genomes]
rs10223205	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12520154	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12657785	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1963050	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2411991	0.87[EUR][1000 genomes]
rs61747996	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6874421	0.81[AMR][1000 genomes]
rs6877197	0.81[AMR][1000 genomes]
rs72814700	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72814702	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72816603	0.81[AMR][1000 genomes]
rs72816608	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72816609	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72816613	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72816625	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72816629	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883218	chr5:178219855-178349391	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv600464	chr5:178344648-178350709	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600465	chr5:178344648-178352002	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv600466	chr5:178344648-178352245	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv600467	chr5:178344648-178352820	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv600468	chr5:178344648-178353156	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv819936	chr5:178345813-178351240	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv823354	chr5:178345876-178351699	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv821324	chr5:178345876-178353585	ZNF genes & repeats Weak transcription Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv823355	chr5:178346031-178351699	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178335600-178349000	ZNF genes & repeats	Liver	Liver
2	chr5:178335800-178367000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr5:178341600-178347000	ZNF genes & repeats	Adipose Nuclei	Adipose
4	chr5:178341600-178347200	ZNF genes & repeats	Stomach Smooth Muscle	stomach
5	chr5:178341600-178367000	ZNF genes & repeats	Fetal Brain Female	brain
6	chr5:178342000-178348200	Weak transcription	Right Ventricle	heart
7	chr5:178343000-178367200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr5:178343800-178348000	Weak transcription	Brain Angular Gyrus	brain
9	chr5:178344800-178346400	Strong transcription	Brain Substantia Nigra	brain
10	chr5:178345000-178346600	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:178345400-178346200	ZNF genes & repeats	Brain Germinal Matrix	brain
12	chr5:178345400-178347200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr5:178345600-178346600	Weak transcription	Aorta	Aorta
14	chr5:178345600-178347600	Weak transcription	Fetal Kidney	kidney
15	chr5:178345600-178347800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:178345600-178348000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:178345600-178349400	Weak transcription	Primary T cells from cord blood	blood
18	chr5:178345800-178346600	Weak transcription	Ovary	ovary
19	chr5:178346000-178348000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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