Variant report

Variant	rs10038294
Chromosome Location	chr5:36914078-36914079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36910124..36911692-chr5:36912890..36915128,2	K562	blood:
2	chr5:36913361..36915325-chr5:36918207..36920835,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10066734	1.00[AMR][1000 genomes]
rs10214226	1.00[MEX][hapmap]
rs11956853	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap]
rs149459	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs159750	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap]
rs159754	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap]
rs28417715	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs294691	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap]
rs294694	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs300047	0.80[LWK][hapmap];1.00[MEX][hapmap]
rs300050	1.00[AMR][1000 genomes]
rs301900	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs59063665	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60014337	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863784	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap]
rs7702256	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap]
rs7724311	1.00[ASW][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492319	chr5:36570707-37061019	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv525478	chr5:36804225-37349895	Strong transcription Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	esv1793961	chr5:36866835-37361728	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv530225	chr5:36886635-37331912	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv830264	chr5:36887002-36941494	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1024051	chr5:36899712-37303001	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv537725	chr5:36899712-37303001	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36895800-36918800	Weak transcription	Small Intestine	intestine
2	chr5:36895800-36928600	Weak transcription	HSMM	muscle
3	chr5:36899000-36926400	Weak transcription	Gastric	stomach
4	chr5:36903800-36919200	Weak transcription	K562	blood
5	chr5:36904200-36914600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr5:36905000-36919400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:36905200-36914200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr5:36905200-36914200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:36905200-36914400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:36905200-36920000	Weak transcription	Primary B cells from cord blood	blood
11	chr5:36905200-36927800	Weak transcription	Psoas Muscle	Psoas
12	chr5:36906600-36915000	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr5:36906800-36916200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:36907400-36928600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:36907400-36938200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:36909000-36915400	Weak transcription	NHDF-Ad	bronchial
17	chr5:36909000-36915800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:36909200-36915600	Weak transcription	Fetal Heart	heart
19	chr5:36909200-36915800	Weak transcription	Stomach Mucosa	stomach
20	chr5:36909400-36920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:36909400-36921000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr5:36910200-36928000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:36911000-36919600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:36911200-36928600	Weak transcription	A549	lung
25	chr5:36911400-36915800	Weak transcription	Brain Substantia Nigra	brain
26	chr5:36911400-36919200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr5:36911400-36919400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr5:36911400-36920800	Weak transcription	Colon Smooth Muscle	Colon
29	chr5:36911600-36915200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:36911600-36919200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr5:36911600-36919600	Weak transcription	Brain Anterior Caudate	brain
32	chr5:36911600-36928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr5:36912000-36914200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr5:36912600-36919000	Weak transcription	Ovary	ovary
35	chr5:36913000-36925800	Weak transcription	Primary T cells from cord blood	blood
36	chr5:36913400-36914200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr5:36913600-36914400	Enhancers	Left Ventricle	heart
38	chr5:36913600-36914800	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr5:36913800-36914200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr5:36913800-36914600	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr5:36913800-36931400	Weak transcription	Primary T cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links