Variant report
| Variant | rs10038441 |
|---|---|
| Chromosome Location | chr5:90797142-90797143 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10037568 | 1.00[ASN][1000 genomes] |
| rs10041527 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10042221 | 1.00[ASN][1000 genomes] |
| rs10073149 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10079979 | 0.93[ASN][1000 genomes] |
| rs10474362 | 1.00[ASN][1000 genomes] |
| rs10514350 | 0.89[ASN][1000 genomes] |
| rs13355661 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13358598 | 1.00[ASN][1000 genomes] |
| rs13435929 | 1.00[ASN][1000 genomes] |
| rs13435932 | 1.00[ASN][1000 genomes] |
| rs1593059 | 1.00[ASN][1000 genomes] |
| rs1593060 | 1.00[ASN][1000 genomes] |
| rs17579249 | 1.00[ASN][1000 genomes] |
| rs17579567 | 1.00[ASN][1000 genomes] |
| rs17640214 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17640581 | 1.00[ASN][1000 genomes] |
| rs28437638 | 0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4146347 | 1.00[ASN][1000 genomes] |
| rs6870792 | 1.00[ASN][1000 genomes] |
| rs72771554 | 1.00[ASN][1000 genomes] |
| rs72771564 | 1.00[ASN][1000 genomes] |
| rs72771565 | 0.80[ASN][1000 genomes] |
| rs72771566 | 0.80[ASN][1000 genomes] |
| rs72771567 | 1.00[ASN][1000 genomes] |
| rs72771569 | 1.00[ASN][1000 genomes] |
| rs72771571 | 0.96[ASN][1000 genomes] |
| rs9293569 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024813 | chr5:90321535-90870739 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
| 2 | nsv537806 | chr5:90321535-90870739 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
| 3 | nsv1030453 | chr5:90709080-90849693 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3414088 | chr5:90744553-90861592 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv1006947 | chr5:90796650-90802545 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:90789200-90801400 | Weak transcription | Aorta | Aorta |
| 2 | chr5:90795600-90797800 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr5:90796200-90798400 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
