Variant report

Variant	rs10041527
Chromosome Location	chr5:90799752-90799753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10037568	1.00[ASN][1000 genomes]
rs10038441	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10042221	1.00[ASN][1000 genomes]
rs10073149	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079979	0.93[ASN][1000 genomes]
rs10474362	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10514350	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs13355661	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13358598	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13435929	1.00[ASN][1000 genomes]
rs13435932	1.00[ASN][1000 genomes]
rs1593059	1.00[ASN][1000 genomes]
rs1593060	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17579249	1.00[ASN][1000 genomes]
rs17579567	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17640214	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17640581	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28437638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146347	1.00[ASN][1000 genomes]
rs6870498	0.85[YRI][hapmap]
rs6870792	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72771554	1.00[ASN][1000 genomes]
rs72771564	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72771565	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs72771566	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs72771567	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72771569	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72771571	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7717427	0.85[YRI][hapmap]
rs9293569	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv1030453	chr5:90709080-90849693	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3414088	chr5:90744553-90861592	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1006947	chr5:90796650-90802545	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90789200-90801400	Weak transcription	Aorta	Aorta
2	chr5:90797800-90809800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:90799600-90800000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:90799600-90800000	Enhancers	Gastric	stomach

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