Variant report

Variant	rs10038644
Chromosome Location	chr5:126466815-126466816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10035217	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10037625	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10041457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1004500	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10062622	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13154281	0.85[EUR][1000 genomes]
rs13178353	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13190493	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1543815	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs173555	0.91[EUR][1000 genomes]
rs1860439	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1860440	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1860441	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs193712	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2041318	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2109215	0.86[EUR][1000 genomes]
rs2191209	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2408788	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2408789	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2408790	0.86[EUR][1000 genomes]
rs2436437	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248042	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs248062	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs248091	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs248092	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs248093	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs248094	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs248095	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248096	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248101	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs248102	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248104	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs248105	0.81[EUR][1000 genomes]
rs248106	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs248107	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248108	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs248111	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs248112	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs248113	0.80[AMR][1000 genomes]
rs248114	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248115	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248116	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs248117	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs248118	0.80[AMR][1000 genomes]
rs248119	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248122	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248124	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248125	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248127	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248128	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248129	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs248131	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2532882	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2898037	0.87[EUR][1000 genomes]
rs3095137	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3097870	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3915634	0.90[EUR][1000 genomes]
rs3936304	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3936305	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4455612	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4835922	0.87[EUR][1000 genomes]
rs4835925	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4836310	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4836313	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4836315	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62374042	0.90[EUR][1000 genomes]
rs6859962	0.86[EUR][1000 genomes]
rs6864668	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6873502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6875043	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6879393	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6881948	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6883106	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6883627	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6883672	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6884988	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6887929	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6888087	0.91[EUR][1000 genomes]
rs6898415	0.82[EUR][1000 genomes]
rs6899133	0.82[EUR][1000 genomes]
rs727038	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7700812	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7731621	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7734890	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs885699	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9687751	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9687752	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9763733	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs990743	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv1816248	chr5:126399039-126486539	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10038644	C5orf63	cis	Artery Tibial	GTEx
rs10038644	C5orf63	cis	Nerve Tibial	GTEx
rs10038644	MARCH3	cis	Muscle Skeletal	GTEx

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126465400-126476000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:126466600-126467200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr5:126466800-126467200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:126466800-126467400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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