Variant report

Variant	rs62374042
Chromosome Location	chr5:126439327-126439328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10035217	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10037625	0.82[EUR][1000 genomes]
rs10038644	0.90[EUR][1000 genomes]
rs10041457	0.90[EUR][1000 genomes]
rs1004500	0.84[EUR][1000 genomes]
rs10062622	0.88[EUR][1000 genomes]
rs13190493	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1543815	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs173555	0.82[EUR][1000 genomes]
rs1860439	0.82[EUR][1000 genomes]
rs1860440	0.89[EUR][1000 genomes]
rs1860441	0.87[EUR][1000 genomes]
rs193712	0.82[EUR][1000 genomes]
rs2041318	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2191209	0.84[EUR][1000 genomes]
rs2408788	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2408789	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2436437	0.82[EUR][1000 genomes]
rs248042	0.87[EUR][1000 genomes]
rs248091	0.84[EUR][1000 genomes]
rs248093	0.83[EUR][1000 genomes]
rs248094	0.83[EUR][1000 genomes]
rs248106	0.84[EUR][1000 genomes]
rs248111	0.83[EUR][1000 genomes]
rs248112	0.82[EUR][1000 genomes]
rs248114	0.82[EUR][1000 genomes]
rs248115	0.82[EUR][1000 genomes]
rs248116	0.80[EUR][1000 genomes]
rs248117	0.81[EUR][1000 genomes]
rs248119	0.82[EUR][1000 genomes]
rs248122	0.82[EUR][1000 genomes]
rs248124	0.82[EUR][1000 genomes]
rs248125	0.82[EUR][1000 genomes]
rs248127	0.82[EUR][1000 genomes]
rs248128	0.82[EUR][1000 genomes]
rs248129	0.82[EUR][1000 genomes]
rs248131	0.82[EUR][1000 genomes]
rs2532882	0.82[EUR][1000 genomes]
rs3095137	0.82[EUR][1000 genomes]
rs3097870	0.82[EUR][1000 genomes]
rs3915634	0.81[EUR][1000 genomes]
rs3936304	0.88[EUR][1000 genomes]
rs3936305	0.88[EUR][1000 genomes]
rs4455612	0.90[EUR][1000 genomes]
rs4835925	0.82[EUR][1000 genomes]
rs4836310	0.90[EUR][1000 genomes]
rs4836313	0.90[EUR][1000 genomes]
rs4836315	0.82[EUR][1000 genomes]
rs6864668	0.82[EUR][1000 genomes]
rs6873502	0.90[EUR][1000 genomes]
rs6875043	0.88[EUR][1000 genomes]
rs6879393	0.82[EUR][1000 genomes]
rs6881948	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6883106	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6883627	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6884988	0.90[EUR][1000 genomes]
rs6887929	0.84[EUR][1000 genomes]
rs6888087	0.82[EUR][1000 genomes]
rs727038	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7700812	0.82[EUR][1000 genomes]
rs7731621	0.85[EUR][1000 genomes]
rs7734890	0.90[EUR][1000 genomes]
rs885699	0.82[EUR][1000 genomes]
rs9687751	0.87[EUR][1000 genomes]
rs9687752	0.87[EUR][1000 genomes]
rs9763733	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024265	chr5:126213004-126691163	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv869897	chr5:126224358-126445210	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv1816248	chr5:126399039-126486539	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:126433400-126444200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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