Variant report
| Variant | rs10039131 |
|---|---|
| Chromosome Location | chr5:108013730-108013731 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:108013253..108015897-chr5:108063039..108065514,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000272523 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10477928 | 0.91[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs11952230 | 0.91[CHB][hapmap] |
| rs11952282 | 0.81[ASN][1000 genomes] |
| rs12719095 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1355080 | 0.87[ASN][1000 genomes] |
| rs1508779 | 0.84[CHB][hapmap];0.87[JPT][hapmap] |
| rs2940519 | 0.88[ASN][1000 genomes] |
| rs2963050 | 0.92[ASN][1000 genomes] |
| rs2963051 | 0.82[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35842524 | 0.80[ASN][1000 genomes] |
| rs4623197 | 0.92[CHB][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes] |
| rs4957562 | 0.90[ASN][1000 genomes] |
| rs4957563 | 0.86[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4957777 | 0.88[ASN][1000 genomes] |
| rs4957781 | 0.88[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56915053 | 0.80[ASN][1000 genomes] |
| rs62361278 | 0.91[ASN][1000 genomes] |
| rs7703883 | 0.91[CHB][hapmap];0.81[ASN][1000 genomes] |
| rs7704020 | 0.81[ASN][1000 genomes] |
| rs7704155 | 0.81[ASN][1000 genomes] |
| rs7704581 | 0.81[ASN][1000 genomes] |
| rs7737443 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs9968588 | 0.83[CHB][hapmap];0.86[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882689 | chr5:107595383-108299744 | Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 61 gene(s) | inside rSNPs | diseases |
| 2 | nsv1024076 | chr5:107991426-108028223 | Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1034158 | chr5:107995509-108018395 | Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv523619 | chr5:107999505-108016782 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:108007000-108034800 | Weak transcription | Right Atrium | heart |
| 2 | chr5:108013600-108014200 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
