Variant report

Variant	rs7737443
Chromosome Location	chr5:108016782-108016783
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:108016385..108017936-chr5:108083051..108084580,2	K562	blood:
2	chr5:108016773..108017600-chr5:108774230..108775023,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151422	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10039131	0.93[ASN][1000 genomes]
rs10477427	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10477928	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11952230	1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11952282	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12719095	0.91[ASN][1000 genomes]
rs1355080	0.83[ASN][1000 genomes]
rs1508779	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1508780	0.86[ASN][1000 genomes]
rs2940519	0.83[ASN][1000 genomes]
rs2963050	0.88[ASN][1000 genomes]
rs2963051	0.88[ASN][1000 genomes]
rs35310669	0.86[ASN][1000 genomes]
rs35842524	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4623197	1.00[CEU][hapmap];0.91[CHB][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4957562	0.83[ASN][1000 genomes]
rs4957563	0.83[ASN][1000 genomes]
rs4957777	0.83[ASN][1000 genomes]
rs4957781	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56915053	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62361278	0.84[ASN][1000 genomes]
rs7703883	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7704020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7704155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7704581	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7735104	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9968588	0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1024076	chr5:107991426-108028223	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1034158	chr5:107995509-108018395	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv523619	chr5:107999505-108016782	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7737443	STARD4	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108007000-108034800	Weak transcription	Right Atrium	heart
2	chr5:108014000-108016800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:108014200-108016800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:108014200-108017000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:108014200-108020800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:108014400-108017200	Weak transcription	GM12878-XiMat	blood
7	chr5:108014600-108017200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:108014800-108017200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:108016600-108017400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr5:108016600-108017400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr5:108016600-108017600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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