Variant report

Variant	rs10039956
Chromosome Location	chr5:113010928-113010929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10477502	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13173069	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183685	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28519541	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6594746	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6859352	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6859521	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6891711	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs728915	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9326902	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113009600-113011200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:113009600-113011400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:113009800-113011400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr5:113010200-113011200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr5:113010400-113011200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr5:113010400-113011200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:113010800-113011200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:113010800-113011200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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