Variant report

Variant	rs13183685
Chromosome Location	chr5:113006383-113006384
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10039956	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10477502	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13173069	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28519541	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6594746	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6859352	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6859521	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6891711	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs728915	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9326902	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599407	chr5:112981528-113029914	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113002000-113007400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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