Variant report

Variant	rs10040024
Chromosome Location	chr5:35712310-35712311
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10037597	0.90[EUR][1000 genomes]
rs10037620	0.90[EUR][1000 genomes]
rs10039940	0.98[EUR][1000 genomes]
rs10043180	0.90[EUR][1000 genomes]
rs10043224	0.90[EUR][1000 genomes]
rs10057421	0.90[EUR][1000 genomes]
rs10066047	0.94[EUR][1000 genomes]
rs10066144	0.85[EUR][1000 genomes]
rs10066293	0.98[EUR][1000 genomes]
rs10070465	0.90[EUR][1000 genomes]
rs10072009	0.90[EUR][1000 genomes]
rs10072048	0.90[EUR][1000 genomes]
rs10073537	0.98[EUR][1000 genomes]
rs10078803	0.98[EUR][1000 genomes]
rs10941259	0.90[EUR][1000 genomes]
rs11954310	0.90[EUR][1000 genomes]
rs11958367	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12515119	0.94[EUR][1000 genomes]
rs12697346	0.98[EUR][1000 genomes]
rs12697347	0.98[EUR][1000 genomes]
rs12697348	0.98[EUR][1000 genomes]
rs13153801	0.81[EUR][1000 genomes]
rs13153802	0.95[EUR][1000 genomes]
rs13153876	0.98[EUR][1000 genomes]
rs13153894	0.98[EUR][1000 genomes]
rs13153955	0.96[EUR][1000 genomes]
rs13154215	0.95[EUR][1000 genomes]
rs13170082	0.95[EUR][1000 genomes]
rs13170390	0.95[EUR][1000 genomes]
rs13182061	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13356541	0.95[EUR][1000 genomes]
rs34181885	0.89[EUR][1000 genomes]
rs57276516	0.80[AMR][1000 genomes]
rs6451208	0.96[EUR][1000 genomes]
rs6451209	0.90[EUR][1000 genomes]
rs6451211	0.90[EUR][1000 genomes]
rs66496382	0.97[EUR][1000 genomes]
rs6869545	0.90[EUR][1000 genomes]
rs6870156	0.85[EUR][1000 genomes]
rs6870755	0.90[EUR][1000 genomes]
rs6871358	0.90[EUR][1000 genomes]
rs6875846	0.90[EUR][1000 genomes]
rs6887970	0.90[EUR][1000 genomes]
rs6893432	0.90[EUR][1000 genomes]
rs6893470	0.90[EUR][1000 genomes]
rs6897149	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7444550	0.95[EUR][1000 genomes]
rs7447772	0.95[EUR][1000 genomes]
rs7705347	0.90[EUR][1000 genomes]
rs7705527	0.81[EUR][1000 genomes]
rs7705633	0.89[EUR][1000 genomes]
rs7705656	0.81[EUR][1000 genomes]
rs7705851	0.90[EUR][1000 genomes]
rs7706122	0.90[EUR][1000 genomes]
rs7725060	0.90[EUR][1000 genomes]
rs7725807	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7727052	0.90[EUR][1000 genomes]
rs7727246	0.90[EUR][1000 genomes]
rs7729774	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35697000-35717000	Weak transcription	Left Ventricle	heart
3	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:35710800-35712400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links