Variant report
| Variant | rs57276516 |
|---|---|
| Chromosome Location | chr5:35762592-35762593 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr5:35762581-35762636 | HUVEC | blood vessel: | n/a | n/a |
| 2 | FOS | chr5:35762494-35762827 | MCF10A-Er-Src | breast: | n/a | n/a |
| 3 | FOS | chr5:35762488-35762710 | MCF10A-Er-Src | breast: | n/a | n/a |
| 4 | FOS | chr5:35762518-35762774 | MCF10A-Er-Src | breast: | n/a | n/a |
| 5 | FOS | chr5:35762494-35762789 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| SPEF2 | TF binding region |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10037597 | 0.80[EUR][1000 genomes] |
| rs10037620 | 0.80[EUR][1000 genomes] |
| rs10040024 | 0.80[AMR][1000 genomes] |
| rs10042935 | 1.00[ASN][1000 genomes] |
| rs10043180 | 0.80[EUR][1000 genomes] |
| rs10043224 | 0.80[EUR][1000 genomes] |
| rs10057421 | 0.80[EUR][1000 genomes] |
| rs10070465 | 0.80[EUR][1000 genomes] |
| rs10072009 | 0.80[EUR][1000 genomes] |
| rs10072048 | 0.80[EUR][1000 genomes] |
| rs10941259 | 0.80[EUR][1000 genomes] |
| rs10941262 | 0.97[ASN][1000 genomes] |
| rs11741496 | 0.90[ASN][1000 genomes] |
| rs11749262 | 0.90[ASN][1000 genomes] |
| rs11954310 | 0.81[EUR][1000 genomes] |
| rs1389829 | 0.90[ASN][1000 genomes] |
| rs34181885 | 0.80[EUR][1000 genomes] |
| rs4869476 | 0.90[ASN][1000 genomes] |
| rs4869618 | 1.00[ASN][1000 genomes] |
| rs56163473 | 1.00[ASN][1000 genomes] |
| rs56322028 | 0.90[ASN][1000 genomes] |
| rs56345129 | 1.00[ASN][1000 genomes] |
| rs61681692 | 0.82[ASN][1000 genomes] |
| rs6451209 | 0.81[EUR][1000 genomes] |
| rs6451211 | 0.81[EUR][1000 genomes] |
| rs6870755 | 0.81[EUR][1000 genomes] |
| rs6871358 | 0.81[EUR][1000 genomes] |
| rs6875846 | 0.81[EUR][1000 genomes] |
| rs6883204 | 0.96[ASN][1000 genomes] |
| rs6897149 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72738869 | 1.00[ASN][1000 genomes] |
| rs72738870 | 1.00[ASN][1000 genomes] |
| rs7705851 | 0.80[EUR][1000 genomes] |
| rs7706122 | 0.80[EUR][1000 genomes] |
| rs7725807 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7727052 | 0.80[EUR][1000 genomes] |
| rs7727246 | 0.80[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525477 | chr5:35530905-35792990 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35762200-35762600 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
