Variant report

Variant	rs61681692
Chromosome Location	chr5:35741974-35741975
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10042935	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10941262	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11741496	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1389829	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4869476	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4869618	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56163473	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56345129	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57276516	0.82[ASN][1000 genomes]
rs6897149	0.90[ASN][1000 genomes]
rs72738869	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72738870	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7725807	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv968824	chr5:35740416-35743870	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35737400-35743000	Weak transcription	Fetal Kidney	kidney
2	chr5:35739800-35742600	Weak transcription	Pancreas	Pancrea
3	chr5:35740400-35742000	Enhancers	HepG2	liver
4	chr5:35740600-35742000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:35741200-35742000	Enhancers	Liver	Liver
6	chr5:35741200-35742000	Enhancers	Hela-S3	cervix
7	chr5:35741200-35742200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:35741200-35742800	Enhancers	NHDF-Ad	bronchial
9	chr5:35741400-35742000	Enhancers	HUVEC	blood vessel
10	chr5:35741600-35742000	Enhancers	Osteobl	bone
11	chr5:35741800-35742000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr5:35741800-35742200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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