Variant report

Variant	rs1389829
Chromosome Location	chr5:35780464-35780465
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10037620	0.81[CEU][hapmap]
rs10042935	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10070465	0.81[CEU][hapmap]
rs10941262	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11741496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11749262	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186771	0.89[CEU][hapmap]
rs13356541	0.86[CEU][hapmap]
rs3822736	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869476	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56163473	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56322028	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56345129	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57276516	0.90[ASN][1000 genomes]
rs61681692	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6883204	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6889260	0.93[CHB][hapmap]
rs6895099	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs72738869	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72738870	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35771000-35781800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35772400-35780600	Weak transcription	HSMM	muscle
3	chr5:35774600-35780800	Weak transcription	NHDF-Ad	bronchial
4	chr5:35774600-35781000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:35777000-35780600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:35777000-35780800	Weak transcription	HUVEC	blood vessel
7	chr5:35777400-35780600	Weak transcription	NHLF	lung
8	chr5:35777600-35780600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:35777800-35780600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:35778000-35780800	Enhancers	Thymus	Thymus
11	chr5:35778000-35782200	Enhancers	Fetal Thymus	thymus
12	chr5:35778000-35787800	Enhancers	Dnd41	blood
13	chr5:35778200-35780600	Weak transcription	Osteobl	bone
14	chr5:35778200-35781400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:35778800-35784800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:35779200-35781000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
17	chr5:35779400-35782200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr5:35779400-35782800	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr5:35780000-35780800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr5:35780000-35780800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr5:35780000-35781000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr5:35780000-35782200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr5:35780200-35780800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr5:35780200-35781400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:35780400-35780800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr5:35780400-35780800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr5:35780400-35780800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr5:35780400-35781000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr5:35780400-35781000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:35780400-35781000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr5:35780400-35781000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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