Variant report

Variant	rs13186771
Chromosome Location	chr5:35712580-35712581
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10037597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10037620	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10039940	1.00[ASN][1000 genomes]
rs10043180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10043224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10050982	0.86[ASN][1000 genomes]
rs10057421	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10066047	0.94[ASN][1000 genomes]
rs10066144	0.95[ASN][1000 genomes]
rs10066293	0.98[ASN][1000 genomes]
rs10067994	0.86[ASN][1000 genomes]
rs10070465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10072009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10072048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10073537	1.00[ASN][1000 genomes]
rs10078803	1.00[ASN][1000 genomes]
rs10434591	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10434593	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs10434594	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs10472981	0.86[ASN][1000 genomes]
rs10941257	0.92[ASN][1000 genomes]
rs10941259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11741496	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs11954310	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12515119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12520223	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.82[MKK][hapmap];0.86[ASN][1000 genomes]
rs12697346	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[ASN][1000 genomes]
rs12697347	1.00[ASN][1000 genomes]
rs12697348	1.00[ASN][1000 genomes]
rs13153801	0.96[ASN][1000 genomes]
rs13153802	0.97[ASN][1000 genomes]
rs13153876	1.00[ASN][1000 genomes]
rs13153894	1.00[ASN][1000 genomes]
rs13153955	0.99[ASN][1000 genomes]
rs13154215	0.97[ASN][1000 genomes]
rs13170082	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13170390	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[ASN][1000 genomes]
rs13356541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1389829	0.89[CEU][hapmap]
rs34181885	0.84[ASN][1000 genomes]
rs3822736	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs4869476	0.89[CEU][hapmap]
rs4869618	0.89[CEU][hapmap];0.82[TSI][hapmap]
rs6451208	0.98[ASN][1000 genomes]
rs6451209	0.86[ASN][1000 genomes]
rs6451211	0.86[ASN][1000 genomes]
rs66496382	0.99[ASN][1000 genomes]
rs6869545	0.86[ASN][1000 genomes]
rs6870156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6870755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6871358	0.86[ASN][1000 genomes]
rs6875846	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6887970	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs6889260	0.80[CEU][hapmap]
rs6891098	0.97[GIH][hapmap]
rs6893432	0.86[ASN][1000 genomes]
rs6893470	0.86[ASN][1000 genomes]
rs7444550	0.93[ASN][1000 genomes]
rs7447772	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.93[ASN][1000 genomes]
rs7705347	0.86[ASN][1000 genomes]
rs7705527	0.81[ASN][1000 genomes]
rs7705633	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs7705656	0.81[ASN][1000 genomes]
rs7705851	0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7706122	0.86[ASN][1000 genomes]
rs7710255	0.97[GIH][hapmap]
rs7725060	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.85[ASN][1000 genomes]
rs7725807	0.84[CHB][hapmap]
rs7727052	0.86[ASN][1000 genomes]
rs7727246	0.81[ASN][1000 genomes]
rs7729774	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv3336690	chr5:35712580-35712786	Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv1838423	chr5:35712580-35713777	Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs13186771	DAB2	cis	cerebellum	SCAN
rs13186771	DNAJC21	cis	cerebellum	SCAN
rs13186771	UGT3A2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35697000-35717000	Weak transcription	Left Ventricle	heart
3	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood

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