Variant report

Variant	rs6891098
Chromosome Location	chr5:35727501-35727502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35724096..35725968-chr5:35726687..35728607,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CAPSL-3	chr5:35727359-35727509	NONHSAT101014

Extended variants
information (count: 27 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10037564	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10043724	0.82[CEU][hapmap]
rs10043747	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10044393	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs10941258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10941260	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11957963	0.86[CEU][hapmap];0.84[CHB][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs12152782	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12697350	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13186771	0.97[GIH][hapmap]
rs2201410	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs4869462	0.80[EUR][1000 genomes]
rs4869464	0.86[CEU][hapmap];0.84[CHB][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs4869623	0.84[CHB][hapmap];0.85[TSI][hapmap]
rs6451213	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6451217	0.86[CEU][hapmap];0.84[CHB][hapmap];0.95[TSI][hapmap]
rs6451218	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs6875940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6898958	0.84[EUR][1000 genomes]
rs716971	0.82[TSI][hapmap]
rs7443063	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7447119	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7447153	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7705904	0.84[CHB][hapmap]
rs7710255	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9292608	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6891098	RICTOR	cis	parietal	SCAN
rs6891098	LOC149134	trans	parietal	SCAN
rs6891098	UGT3A2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35725200-35729800	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35727200-35728000	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr5:35727400-35734600	Weak transcription	Lung	lung

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