Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35705714..35707847-chr5:35709289..35711545,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10037564	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs10043724	0.82[CEU][hapmap]
rs10043747	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10044393	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs1013156	0.87[YRI][hapmap]
rs10941260	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs11957963	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs12152782	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12697350	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs4869464	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs4869623	0.84[CHB][hapmap]
rs6451207	0.80[YRI][hapmap];0.80[AFR][1000 genomes]
rs6451213	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6451217	0.86[CEU][hapmap];0.84[CHB][hapmap]
rs6451218	0.82[CEU][hapmap];0.85[CHB][hapmap]
rs6875940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6891098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7447119	0.85[ASN][1000 genomes]
rs7447153	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7705904	0.85[CHB][hapmap]
rs7710255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9292608	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv515831	chr5:35706279-35723861	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35693800-35714000	Weak transcription	Brain Anterior Caudate	brain
2	chr5:35695000-35711000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:35697000-35710600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr5:35697000-35717000	Weak transcription	Left Ventricle	heart
5	chr5:35699000-35711200	Weak transcription	Ovary	ovary
6	chr5:35699000-35711600	Weak transcription	Lung	lung
7	chr5:35699400-35720600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr5:35706400-35711000	Weak transcription	Brain Substantia Nigra	brain
9	chr5:35708200-35710800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:35708800-35710000	Weak transcription	Fetal Intestine Large	intestine
11	chr5:35709000-35710000	Enhancers	Primary hematopoietic stem cells	blood
12	chr5:35709000-35710000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:35709200-35710000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:35709600-35710800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr5:35709600-35711800	Weak transcription	Fetal Kidney	kidney

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