Variant report

Variant	rs10043724
Chromosome Location	chr5:35787281-35787282
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10037564	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs10043734	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10044393	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10941258	0.82[CEU][hapmap]
rs10941260	0.82[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs11957963	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12697350	0.82[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.82[EUR][1000 genomes]
rs2201410	0.94[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4869462	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869464	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4869623	0.83[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62353695	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6451213	0.82[CEU][hapmap];0.89[CHB][hapmap];0.82[EUR][1000 genomes]
rs6451217	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6451218	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6875940	0.82[CEU][hapmap]
rs6891098	0.82[CEU][hapmap]
rs716971	0.83[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7443063	0.82[EUR][1000 genomes]
rs7705904	0.90[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7710255	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35778000-35787800	Enhancers	Dnd41	blood
2	chr5:35781800-35788000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:35782000-35787800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:35782200-35789000	Weak transcription	NHDF-Ad	bronchial
5	chr5:35782400-35788000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:35782400-35788800	Weak transcription	NHLF	lung
7	chr5:35782600-35789800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:35782800-35787800	Enhancers	Primary T cells from cord blood	blood
9	chr5:35783400-35789600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:35784200-35787800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:35784200-35789800	Weak transcription	HSMM	muscle
12	chr5:35784400-35787600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr5:35784600-35787600	Enhancers	Fetal Thymus	thymus
14	chr5:35785000-35787800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr5:35785000-35789000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:35785400-35789600	Weak transcription	Osteobl	bone
18	chr5:35786400-35788800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr5:35786400-35790000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:35787000-35787400	Weak transcription	Thymus	Thymus
21	chr5:35787000-35788000	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr5:35787000-35792200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr5:35787200-35787400	Enhancers	Primary T cells fromperipheralblood	blood

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