Variant report

Variant	rs10037564
Chromosome Location	chr5:35739079-35739080
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10043724	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap]
rs10043734	0.81[EUR][1000 genomes]
rs10043747	0.95[EUR][1000 genomes]
rs10044393	0.82[CEU][hapmap];0.90[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10053840	0.88[YRI][hapmap]
rs10941258	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs10941260	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11957963	0.86[CEU][hapmap];0.95[CHB][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12152782	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12697350	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2201410	1.00[CHB][hapmap]
rs4266432	0.82[YRI][hapmap]
rs4869462	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4869464	0.86[CEU][hapmap];0.95[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4869623	0.95[CHB][hapmap]
rs62353695	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6451213	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6451217	0.86[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6451218	0.82[CEU][hapmap];0.95[CHB][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6875940	1.00[CEU][hapmap];0.80[CHB][hapmap]
rs6891098	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6898958	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs716971	0.90[CHB][hapmap]
rs7443063	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7447119	0.84[EUR][1000 genomes]
rs7447153	0.91[CEU][hapmap];0.80[CHB][hapmap];0.84[EUR][1000 genomes]
rs7705904	0.95[CHB][hapmap]
rs7710255	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9292608	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35737000-35741200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr5:35737200-35740600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr5:35737400-35743000	Weak transcription	Fetal Kidney	kidney

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