Variant report
| Variant | rs7447153 |
|---|---|
| Chromosome Location | chr5:35726283-35726284 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:35724641..35726899-chr5:35731483..35734096,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10037564 | 0.91[CEU][hapmap];0.80[CHB][hapmap];0.84[EUR][1000 genomes] |
| rs10043747 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10044393 | 0.81[CHB][hapmap] |
| rs10941258 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs10941260 | 0.90[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes] |
| rs11957963 | 0.84[CHB][hapmap] |
| rs12152782 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12697350 | 0.91[CEU][hapmap];0.85[CHB][hapmap];0.85[EUR][1000 genomes] |
| rs4869464 | 0.84[CHB][hapmap] |
| rs4869623 | 0.84[CHB][hapmap] |
| rs6451213 | 0.90[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes] |
| rs6451217 | 0.84[CHB][hapmap] |
| rs6451218 | 0.85[CHB][hapmap] |
| rs6875940 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs6891098 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6898958 | 0.93[EUR][1000 genomes] |
| rs7443063 | 0.85[EUR][1000 genomes] |
| rs7447119 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7705904 | 0.85[CHB][hapmap] |
| rs7710255 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9292608 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525477 | chr5:35530905-35792990 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:35725200-35729800 | Weak transcription | Brain Anterior Caudate | brain |
