Variant report

Variant	rs6451213
Chromosome Location	chr5:35742741-35742742
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10037564	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10043724	0.82[CEU][hapmap];0.89[CHB][hapmap]
rs10043734	0.82[EUR][1000 genomes]
rs10043747	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10044393	0.86[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10941258	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs10941260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11957963	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11960663	0.87[LWK][hapmap];0.81[YRI][hapmap]
rs12152782	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12697350	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2201410	0.81[CEU][hapmap];0.95[CHB][hapmap];0.89[TSI][hapmap]
rs4869462	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4869464	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4869623	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.85[TSI][hapmap];0.90[ASN][1000 genomes]
rs62353695	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6451217	0.86[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6451218	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6875940	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6891098	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6898958	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs716971	0.95[CHB][hapmap];0.83[CHD][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap]
rs7443063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7447119	0.85[EUR][1000 genomes]
rs7447153	0.90[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs7705904	1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs7710255	1.00[CEU][hapmap];0.84[CHB][hapmap];0.95[TSI][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9292608	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv968824	chr5:35740416-35743870	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35737400-35743000	Weak transcription	Fetal Kidney	kidney
2	chr5:35741200-35742800	Enhancers	NHDF-Ad	bronchial
3	chr5:35742000-35743000	Enhancers	Muscle Satellite Cultured Cells	--

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