Variant report

Variant	rs2201410
Chromosome Location	chr5:35798604-35798605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35797431..35799270-chr5:35801960..35804171,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10037564	1.00[CHB][hapmap]
rs10043724	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs10043734	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10044393	0.95[CEU][hapmap];0.90[CHB][hapmap];0.91[EUR][1000 genomes]
rs10941260	0.81[CEU][hapmap];0.95[CHB][hapmap];0.92[TSI][hapmap]
rs11957963	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs12697350	0.95[CHB][hapmap]
rs4869462	0.91[EUR][1000 genomes]
rs4869464	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs4869623	0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[TSI][hapmap];0.83[ASN][1000 genomes]
rs62353695	0.93[EUR][1000 genomes]
rs6451213	0.81[CEU][hapmap];0.95[CHB][hapmap];0.89[TSI][hapmap]
rs6451217	0.95[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6451218	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6891098	0.81[CEU][hapmap];0.89[TSI][hapmap]
rs716971	0.94[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7705904	0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs7710255	0.81[CEU][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35785000-35803200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:35791000-35799600	Weak transcription	Osteobl	bone
3	chr5:35795200-35802600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:35796000-35800000	Weak transcription	HSMMtube	muscle
5	chr5:35797400-35798800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:35797400-35798800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:35797400-35799400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr5:35797400-35799600	Weak transcription	NHDF-Ad	bronchial
9	chr5:35797400-35803200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:35797600-35799000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr5:35797600-35802800	Weak transcription	Fetal Brain Male	brain
12	chr5:35797600-35803000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr5:35797600-35803000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:35797800-35799200	Weak transcription	Primary T cells from cord blood	blood
15	chr5:35797800-35799200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr5:35797800-35799600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr5:35797800-35802800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr5:35797800-35804200	Weak transcription	Pancreas	Pancrea
19	chr5:35798000-35802200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr5:35798000-35803000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:35798200-35802400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr5:35798200-35802400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr5:35798200-35802800	Weak transcription	Dnd41	blood
24	chr5:35798400-35799400	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:35798600-35801400	Weak transcription	Fetal Thymus	thymus
26	chr5:35798600-35802200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr5:35798600-35802400	Weak transcription	Thymus	Thymus
28	chr5:35798600-35802800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:35798600-35803000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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